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DATABASE:
FPbase - the database of all known fluorescent proteins: https://www.fpbase.org/
OpenCell - endogenous human protein localization and interactions: https://opencell.czbiohub.org/
Cell Map - protein localization mapped by proximity labeling & mass spec: https://humancellmap.org
Protein Atlas - the human proteomic database: https://www.proteinatlas.org/
UCSC genome browser - human genome database: https://genome.ucsc.edu/
NCBI FTP - download genome data and tools from NCBI: https://ftp.ncbi.nlm.nih.gov/
Uniprot - protein database: https://www.uniprot.org/
Genecards - the human gene database: https://www.genecards.org
Croatan - pre-design of sgRNA pairs: http://croatan.hannonlab.org/#tab-downloads
Nanobody DB - Collection of nanobody information: http://research.naturalantibody.com/nanobodies
SAbDab - The Structural Antibody Database: https://opig.stats.ox.ac.uk/webapps/sabdab-sabpred/sabdab
iUUCD 2.0 - ubiquitin and ubiquitin-like conjugation database: http://iuucd.biocuckoo.org/index.php
RNA Granule Database - composition and regulatory dynamics of stress granules: https://rnagranuledb.lunenfeld.ca
CSH Protocols - Buffer recipes and experiment protocols: http://cshprotocols.cshlp.org/
Deng Lab Server - lab libraries, protocols, schedules and etc (login required): http://172.16.10.142
ORDERING:
Addgene - plasmid distributor: https://www.addgene.org/
Horizon/Dharmacon - inventory of cDNA & ORFs: https://horizondiscovery.com/
Genewiz - DNA products and gene synthesis: https://www.genewiz.com.cn/
Sangon Biotech - vender of all kinds of lab supplies: https://www.sangon.com/
NEB double digestion finder - find buffers for double digestion: https://nebcloner.neb.com/#!/redigest
SZBL OA - online purchasing system (login required): https://cg.szbl.ac.cn/login.html
Core facility - equipment booking (login required): http://equipbooking.szbl.ac.cn/PassPort/Login/Index?topLogin=1
ANALYSIS TOOLS:
Kimi - A.I. toolkits: https://kimi.moonshot.cn/
AlphaFold - database of protein structures: https://alphafold.ebi.ac.uk/
BLAST - sequence alignment and inquiry: https://blast.ncbi.nlm.nih.gov/Blast.cgi
Backtranseq - reverse translation from protein to DNA: https://www.ebi.ac.uk/Tools/st/emboss_backtranseq/
FigDraw - free online tool for science illustration: www.figdraw.com/static/index.html
BioGRID - database of protein-protein interactions: https://thebiogrid.org/
Switch.ELM - validated and predicated motif-based molecular switches: http://switches.elm.eu.org/
DEPMAP - human genetics database with siRNA, CRISPR screens: https://depmap.org/portal/
GO analysis - Gene Onology tool at Princeton: https://go.princeton.edu/
TMHMM2.0 - prediction of transmembrane helices: https://services.healthtech.dtu.dk/service.php?TMHMM-2.0
SignalP 6.0 - prediction of signal peptide: https://services.healthtech.dtu.dk/service.php?SignalP-6.0
DeepKla - prediction of lysine lactylation (Kla): http://lin-group.cn/server/DeepKla/index.html
DeepLoc2.0 - prediction of protein subcellular localization: https://services.healthtech.dtu.dk/services/DeepLoc-2.0/
PROSITE - protein domains, families and functional sites: https://prosite.expasy.org/
PhosphoSite - protein post-translational modification database: https://www.phosphosite.org/homeAction
CB-DOCK2 - Cavity-detection guided Blind Docking: https://cadd.labshare.cn/cb-dock2/php/index.php
TIMER2.0 - analysis of gene expression and immune infiltrates across cancer types: http://timer.cistrome.org/
Protein-sol - predicts protein solubility and stability: https://protein-sol.manchester.ac.uk/
PONDR - predictor of Natural Disordered Regions: http://pondr.com/
FoldIndex: probability of protein fold: https://fold.proteopedia.org/cgi-bin/findex
FuzDrop - predicts the probability of liquid-liquid phase separation: https://fuzdrop.bio.unipd.it/predictor
JOURNALS:
Pubmed - library of biomedical literatures: https://pubmed.ncbi.nlm.nih.gov/
BioRxiv - the preprint server for biology: https://www.biorxiv.org/
Cell - https://www.cell.com/
Nature - https://www.nature.com/
Science - https://www.sciencemag.org/
JCB - https://rupress.org/jcb
Molecular Cell - https://www.cell.com/molecular-cell/home
Nature Cell Biology - www.nature.com/ncb/
iBiology - open-access online seminars of Biology: www.ibiology.org/
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