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Cell Cycle and Genome Instability

DENG LABORATORY

PUBLICATIONS

Chen, H.,# Wang, Z.,# Wang, J.,# Chen, W., Ma, X., Zou, X., Plass, M., Lian, C., Ni, T., Wei, G., Li, W.,* Deng, L.,* and Li, L.* (2023) A distinct class of pan-cancer susceptibility genes revealed by alternative polyadenylation transcriptome-wide association study. medRxiv, 23286554.

Du, Y., Hu, X., Chang, W., Deng, L., Ji, W.*, and Xiong, J.* (2023) A possible role of VPS13B in the formation of Golgi-lipid droplet contacts associating with the ER. Contact, DOI:10.1177/25152564231195718

Du, Y., Chang, W., Gao, L., Deng, L., and Ji, W.* (2023) Tex2 is required for lysosomal functions at TMEM55-dependent ER membrane contact sites. Journal of Cell Biology, DOI: 10.1083/jcb.202205133. PMID: 36705603

Lai, J., Meng, Q., Tian, M., Zhuang, X., Pan, P., Du, L., Deng, L., Tang, J., Jin, N., and Rao, L.* (2022) A decoy microrobot that removes SARS-CoV-2 and its variants in wastewater. Cell Reports Physical Science., DOI: 10.1016/j.xcrp.2022.101061 PMID: 36158867

Chu, Q.,# Wang, J.,# Du, Y., Zhou, T., Shi, A., Xiong, J.,* Ji, W.,* and Deng, L.* (2022) Oligomeric CHMP7 mediates three-way ER junctions and ER-mitochondria interactions. Cell Death & Differentiation, doi:10.1038/s41418-022-01048-2.

(#, co-first authors; *, corresponding authors.)

Song, C., and Deng, L.* (2022) FAM135B: a new player in DNA damage response. Genome Instability & Disease, doi: 10.1007/s42764-022-00079-w.

Deng, L.,* Chen, C., Zhai, Y., Dong, Y., and Lou, H.* (2021）Editorial: DNA replication stress and cell fate. Frontiers in Cell and Developmental Biology, 9:778486. doi: 10.3389/fcell.2021.778486

Pu, W., Zhang, H., Qin, P., and Deng, L.* (2021) Nuclear envelope integrity, DNA replication, damage repair and genome stability. Genome Instability & Disease, 1, https://link.springer.com/article/10.1007/s42764-021-00039-w

Sun, K., Li, L., Ma, L., Zhao, Y., Deng, L., Wang, H., and Sun, H.* (2020) Msuite: A High-Performance and Versatile DNA Methylation Data-Analysis Toolkit. Patterns, 1:100127, DOI:https://doi.org/10.1016/j.patter.2020.100127

Dong, Y., Lee, Y., Cui, K., He, M., Wang, B., Bhattacharjee, S., Zhu, B., Yago, T., Zhang, K., Deng, L., Ouyang, K., Wen, A., Cowan, D., Song, K., Yu, L., Brophy, M., Liu, X., Wylie-Sears, J., Wu, H., Wong, S., Cui, G., Kawashima, Y., Matsumoto, H., Kodera, Y., Wojcikiewicz, R., Srivastava, S., Bischoff, J., Wang, D., Ley, K., and Chen H.* (2020). Epsin-mediated degradation of IP3R1 fuels atherosclerosis. Nature Communications, 11(1):3984. doi: 10.1038/s41467-020-17848-4. PMID: 32770009

Deng, L., Wu, R.A., Sonneville, R., Kochenova, O.V., Labib, K., Pellman, D.,* and Walter, J.C.* (2019). Mitotic CDK promotes replisome disassembly, fork collapse, and complex DNA rearrangements. Molecular Cell, 73(5):915-929.e6. PMID: 30849395.

**Recommended by F1000 in Cell Biology

Wu, R.A., Semlow, D.R., Kamimae-Lanning, A.N., Kochenova, O.V., Chistol, G., Hodskinson, M.R., Amunugama, R., Sparks, J.L., Wang, M., Deng, L., Mimoso, C.A., Patel, K.J., and Walter, J.C.* (2019). TRAIP is a master regulator of cross-link repair and replisome stability. Nature, doi: 10.1038/s41586-019-1002-0. PMID: 30842657.

Deng, L., Lee, M.E. Schutt K.L., and Moseley, J.B.* (2017). Phosphatases generate signal specificity downstream of Ssp1 kinase in fission yeast. Molecular and Cellular Biology 37:e00494-16.doi: 10.1128/MCB.00494-16. PMID: 28223368.

**Featured article in MCB, May 2017.

Wu, Y.,* Dong, Y., Duan, S., Zhu, D., and Deng, L. (2017). Editorial: metabolic syndrome, inflammation, and cancer. Mediators of Inflammation, doi.org/10.1155/2017/8259356.

Zurawel, A.A., Kabeche, R., DiGregorio, S.E., Deng, L., Menon, K.M., Opalko, H., Duennwald, M.L., Moseley, J.B., and Supattapone, S.* (2016). CAG expansions are genetically stable and form nontoxic aggregates in cells lacking endogenous polyglutamine proteins. mBio 7, doi: 10.1128/mBio.01367-16. PMID: 27677791.

Dong, Y., Cai, X., Wu, Y., Liu, Y., Deng, L., and Chen, H.* (2016). Insights from genetic model systems of retinal degeneration: role of Epsins in retinal angiogenesis and VEGFR2 signaling. Journal of Nature and Science 3, (1):e281.

Dong, Y., Fernandes, C., Liu, Y., Wu, Y., Wu, H., Brophy, M.L., Deng, L., Song, K., Wen, A., Wong, S., Yan, D., Towner, R., and Chen, H.* (2016). Role of endoplasmic reticulum stress signaling in diabetic endothelial dysfunction and atherosclerosis. Diabetes & Vascular Disease Research. doi: 10.1177/1479164116666762.

Tang, C.,# Deng, L.,# Chang D., Chen S., Wang, X., and Kang, Z.* (2016). TaADF3, actin-depolymerizing factor, negatively modulates wheat resistance against Puccinia striiformis. Frontiers in Plant Science 6:1214 doi: 10.3389/fpls.2015.01214. PMID: 26834758. (#co-first author)

Liu, M., Peng, Y., Li, H., Deng, L., Wang, X., and Kang, Z.* (2016). TaSYP71, a Qc-SNARE, Contributes to Wheat Resistance against Puccinia striiformis f. sp. tritici. Frontiers in Plant Science 6:544. doi: 10.3389/fpls.2016.00544. PMID: 27148348.

Kettenbach, A., Deng, L., Wu, Y., Baldissard, S., Gerber, S., and Moseley, J.B.* (2015). Quantitative phosphoproteomics reveals substrates and mechanisms for the fission yeast DYRK kinase Pom1. Molecular & Cellular Proteomics 14, 1275-87. PMID: 26834758.

Deng, L., Baldissard, S., Kettenbach, A.N., Gerber, S.A., and Moseley, J.B.* (2014). Dueling kinases regulate cell size at division through the SAD kinase Cdr2. Current Biology 24, 428-433. PMID: 24508166.

Deng, L., Kabeche, R., Wang, N., Wu, J.Q., and Moseley, J.B.* (2014). Megadalton node assembly by binding of Skb1 to the membrane anchor Slf1. Molecular Biology of the Cell 25, 2660-2668. PMID: 25009287.

**A highlight from MBoC Selection; Highlighted in October 2014 ASCB Newsletter

Wang, X., Wang, X., Deng, L., Chang, H., Dubcovsky, J., Feng, H., Han, Q., Huang, L., and Kang Z.* (2014). Wheat TaNPSN SNARE homologues are involved in vesicle-mediated resistance to stripe rust (Puccinia striiformis f. sp. tritici). Journal of Experimental Botany 65, 4807–4820. PMID: 24963004.

Deng, L., and Moseley, J.B.* (2013). Compartmentalized nodes control mitotic entry signaling in fission yeast. Molecular Biology of the Cell 24, 1872-1881. PMID: 23615447.

**A highlight from MBoC Selection; Highlighted in July 2013 ASCB Newsletter

邓麟, 顾立伟, 王锋钢, 王经民.* (2012). 抗艾滋病药物的评价与预测模型. 纯粹数学与应用数学 28, 275-284.

Wang, X., Tang, C., Deng, L., Cai, G., Liu, X., Liu, B., Han, Q., Buchenauer, H., Wei, G., Han, D., Huang, L., and Kang, Z.* (2010). Characterization of a pathogenesis-related thaumatin-like protein gene TaPR5 from wheat induced by stripe rust fungus. Physiologia Plantarum 139, 27-38. PMID: 20059734.

Xia, N., Zhang, G., Liu, X., Deng, L., Cai, G., Zhang, Y., Wang, X., Zhao, J., Huang, L., and Kang, Z.* (2010). Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses. Molecular Biology Reports 37, 3703-3712. PMID: 20213512.

邓麟#,王晓杰#, 刘新颖, 蔡高磊, 汤春蕾, 魏国荣, 黄丽丽, 康振生.* (2010). 条锈菌诱导的小麦TaHin1的克隆与表达特征分析. 中国农业科学 43, 2403-2409. (#co-first author)

蔡高磊, 王晓杰, 刘丹, 邓麟, 刘新颖, 汤春蕾, 赵杰, 魏国荣, 黄丽丽, 康振生.* (2010). 条锈菌诱导的小麦TaOZR 的克隆及特征分析. 中国农业科学 43, 2403-2409.

刘新颖, 王晓杰, 薛杰, 夏宁, 邓麟, 蔡高磊, 汤春蕾, 魏国荣, 黄丽丽, 康振生.* (2010). 小麦钙调素新亚型TaCaM5 的克隆及表达分析. 作物学报. 36, 953−960.

邓麟, 曹金锁, 王秦虎, 常伟平. (2007). 植物化感作用研究进展. 陕西农业科学 4, 81-83.

王秦虎, 邓麟, 韩翠芹. (2007). 人工神经网络预测蛋白质二级结构的编码技术综述. 陕西农业科学 6, 109-112.

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